Cytometry dATa anALYSis Tools (CATALYST; Helena L Crowell, Mark D Robinson, Vito RT Zanotelli, Stéphane Chevrier, and Bernd Bodenmiller):

http://bioconductor.org/packages/release/bioc/html/CATALYST.html

Differential discovery in high-dimensional cytometry via high-resolution clustering (DiffCyt;  Lukas M Weber):

http://bioconductor.org/packages/release/bioc/html/diffcyt.html

Society for Immunotherapy of Cancer (SITC) Computational Immuno-oncology Webinar Series:

https://www.sitcancer.org/education/webinars-online/computational